Package: vaccine 1.3.0

vaccine: Statistical Tools for Immune Correlates Analysis of Vaccine Clinical Trial Data

Various semiparametric and nonparametric statistical tools for immune correlates analysis of vaccine clinical trial data. This includes calculation of summary statistics and estimation of risk, vaccine efficacy, controlled effects (controlled risk and controlled vaccine efficacy), and mediation effects (natural direct effect, natural indirect effect, proportion mediated). See Gilbert P, Fong Y, Kenny A, and Carone, M (2022) <doi:10.1093/biostatistics/kxac024> and Fay MP and Follmann DA (2023) <doi:10.48550/arXiv.2208.06465>.

Authors:Avi Kenny [aut, cre]

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vaccine.pdf |vaccine.html
vaccine/json (API)
NEWS

# Install 'vaccine' in R:
install.packages('vaccine', repos = c('https://avi-kenny.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/avi-kenny/vaccine/issues

Pkgdown site:https://avi-kenny.github.io

Datasets:

On CRAN:

Conda:

5.34 score 4 stars 11 scripts 184 downloads 12 exports 121 dependencies

Last updated 1 months agofrom:a28b1e60d6. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 24 2025
R-4.5-winOKMar 24 2025
R-4.5-macOKMar 24 2025
R-4.5-linuxOKMar 24 2025
R-4.4-winOKMar 24 2025
R-4.4-macOKMar 24 2025
R-4.4-linuxOKMar 24 2025
R-4.3-winOKMar 24 2025
R-4.3-macOKMar 24 2025

Exports:as_tablediagnosticsest_ceest_medest_overallload_dataparams_ce_coxparams_ce_npparams_med_npplot_cesummary_statstrim

Dependencies:abindassertthatbackportsbitopsbootbroomcarcarDatacaToolsChernoffDistclassclicodetoolscolorspacecorrplotcowplotcpp11cvAUCdata.tableDerivdigestdoBydplyre1071fansifarverfdrtoolforeachFormulafurrrfuturefuture.applygamgenericsggplot2ggpubrggrepelggsciggsignifglmnetglobalsgluegplotsgridExtragslgtablegtoolshal9001haldensifyinumIsoisobanditeratorsKernSmoothlabelinglatticelibcoinlifecyclelistenvlme4magrittrMASSMatrixMatrixModelsmatrixStatsmboostmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnnlsnumDerivorigamiparallellypartykitpbkrtestpillarpkgconfigpolynomproxypurrrquadprogquantregR6rangerrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangROCRrpartrsampleRsolnprstatixscalesshapesliderSparseMstabsstringistringrSuperLearnersurvivalsurvMLtibbletidyrtidyselecttruncnormutf8vctrsviridisLitewarpwithr

Basic package workflow

Rendered fromvaccine.Rmdusingknitr::rmarkdownon Mar 24 2025.

Last update: 2024-12-24
Started: 2024-02-29